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The phrase "have some alignment" is grammatically correct and can be used in written English.
It refers to having a certain degree of agreement or compatibility between two or more things. Example: "In order to be successful, our team needs to have some alignment in our strategies and goals."
Exact(1)
"I'm not surprised that we have some alignment," Tuck said.
Similar(58)
"I don't know how I can stress enough that [you need] early understanding of the knowledge structure and management of a clinical trial or a research experiment that has some alignment with both existing data, ownership of the data, and expectations for both analysis and sharing of it".
While the themes identified by Novick et al. had some alignment with those identified in the current study, there was particularly clear alignment regarding "learning and gaining meaningful information" [ 17].
These startups all have some level of alignment and already have deep partnerships with art museums.
The resulting alignments have some characteristics that are different from pure nucleotide alignments, such as any gap position is a multiple of three (one codon).
At times, an input alignment may have some columns each of which contains more than 75% gaps.
Of the 100 inspected CDS structures, 22% had supporting evidence of exons from conserved coding regions found by WABA measures of conservation with the C. briggsae genome, and 81% of them have some SwissProt or WormBase protein alignment evidence of exons.
The alignment will also have some phylogenetic signal.
The problem is analogous to having some of the alignment columns contain mostly gaps: these should be identified as "insertion columns"; in the profile HMM context, there should not be a match state associated with such columns (there should be an insertion state instead).
This ensures that the alignment has some covariance information, but makes no judgements about the location of these pairs in sequence or in structure.
In cases where some HCEs have multi-alignment hits and some have no BLASTn hit in the query genome, two hits were looked as one pair according to the query genome, if there are less than two other HCEs located in between the two consecutive HCEs in the human and other species' genomes.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com