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In Cover 2, each safety has deep coverage of half the width of the field.
As nhr-88 has been determined to belong to a gene cluster containing genes that are significantly enriched in L1 muscle [ 17], this example implies that our 454 EST sequencing data has deep coverage of L1-enriched genes.
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Our criterion for inclusion in the analysis was that there must be at least 60% overlap with the entire alignment (by taxon and by site), this was to ensure that we had deep coverage of at least 60% of the protein.
However, when analyzing taxa that have deeper coverage, an average of 16 23% of the sites are missing from any given sample, suggesting a substantial amount of missing data are attributable to the biology of presence/absence variation in the maize genome (Springer et al. 2009).
We have generated here deep coverage of the NB4 proteome with a group of over 10,000 proteins identified that are each supported by an average of 15 separate peptides (Supplementary file 1).
The matching rate of the significant tags from each library to the M. grisea draft genome sequence was about 85%, suggesting that the MPSS data have a very deep coverage of the transcriptome.
This may indicate that 454 EST sequencing has much deeper coverage of L1 stage mRNA sample or, alternatively, the potential novel splice variant shows a relatively higher level of expression at the L1 stage.
We have developed an algorithm that uses deep coverage of sequence reads produced using Illumina's Genome Analyser platform, mapped iteratively to a reference genome, in a way that allows confident sequence correction.
A 17-year veteran of The New Republic, Cohn has built a strong reputation in Washington for deep coverage of budgetary and social welfare issues.
If you want deep coverage of training camp, you've definitely come to the wrong place.
Given sufficiently deep coverage of the samples, the accuracy of this pipeline is generally quite high, but we have identified a substantial dark matter fraction of the genome with very poor accuracy using our Variation Accuracy Simulator (VAS).
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