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Because the mitochondrial genome is haploid and uniparentally inherited in most animals, it has a smaller effective population size than the nuclear genome (Hudson and Turelli 2003).
The mitochondrial genome is typically non-recombining, has a relatively high substitution rate, and has a smaller effective population size than the nuclear genome [ 1].
This result is consistent with more relaxed selection along the D. suzukii lineage, possibly because this species has a smaller effective population size, Ne, than D. biarmipes.
Therefore, both genomes are dispersed through seeds and pollen but the chloroplast genome has a smaller effective population size, which makes it more sensitive to genetic drift and population/species differentiation [ 47].
However, it needs to be cautioned that mtDNA has a smaller effective population size and provides only part of a species' history; thus more robust data from nuclear genes are needed to corroborate this conclusion [ 53, 54].
Evidence suggests that the accumulation of substitutions in recently diverged species typically only applies to mitochondrial DNA [ 32- 34], which is nonrecombining, maternally inherited and thus has a smaller effective population size than genomic DNA.
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Consequently, to be equally significant, peptide hits falling in a category that has a large effective database size need to have smaller P-values than those of peptide hits falling in a category that has a small effective database size.
Thus, this method has to be improved because the German Holstein population has a small effective population size which increases the level of relationships and results in a non-zero covariance between sires and dams.
However, the Japanese wild population, which only distributes in Japan and Korea [ 3], has a moderate sequence diversity (2.02 × 10-3), suggesthat that it has a small effective population size compared to Chinese wild silkworm.
These fish were collected from a natural population in Lake Malawi that has a small effective population size, so heterozygosity should be low, but some variation among individuals is expected.
Amanita thiersii is currently undergoing a range expansion in North America (Wolfe, Kuo, et al. 2012), and genetic diversity across its new range is very low, suggesting that the species is experiencing a population bottleneck and has a small effective population size.
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