Sentence examples for handle alignment from inspiring English sources

IM cannot handle alignment gaps or evidence of recombination in DNA sequence data.

The inference method described in this paper and implemented in the BAli-Phy software [ 24] requires significant computation time in order to handle alignment uncertainty and incorporate indel information.

The Complete Deletion Method was used for handling alignment gaps.

BAli-Phy elegantly handles alignment bias and uncertainty by treating the alignment as a parameter and integrating over it.

Phylogenetic analyses were conducted using the Neighbour-Joining method with the pairwise deletion option for handling alignment gaps and the Poisson correction model for distance computation.

Phylogenetic and molecular evolutionary analyses were conducted using the neighbor-joining (NJ) method [ 30] implemented in MEGA, with the pair-wise deletion option for handling alignment gaps, and the Poisson correction model for computing distance.

AliView handles alignments of unlimited size in the formats most commonly used, i.e. FASTA, Phylip, Nexus, Clustal and MSF.

Jalview [ 48] provides a platform for handling alignments, colour-coding by amino acid similarity and provides web services to remotely interface with alignment software such as Clustal Omega [ 49] and secondary structure prediction tools such as JPred [ 50].

The arithmetic of ordered set-valued functions is meaningless; hence, a novel concept, namely, generalized correlation, is proposed to handle shape alignment problems.

This meant that we only needed to hand-curate 200 short snippets to handle the alignment of the hypervariable region.

The key features of AliView include the ability to swiftly handle large alignments with low memory impact (see Table 1 for comparison with other popular free cross-platform alignment viewers).