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What this does is shrink the frequency content of the first half of the array into the first quarter.
Notice that the PAR scores of the upper half of the array numbers (T4, T5, and T6) are higher than the ones of the lower half.
Mutations in the connexin gene family of gap junction proteins represent approximately half of the array and encompass sequence changes in the GJB2 (connexin 26), GJB6 (connexin 30), GJB3 (connexin 31) and GJA1 (connexin 43) genes.
A total number of 96,292 oligos were printed and almost half of the array contained oligos (47,291) also designed with the opposite orientation.
Pearson-product moment correlations are provided in the top half of the array, with Ns in parentheses Data on mathematical environments were collected via the internet from children when they were 10 years old using the Grade 4 Student Background Questionnaire ((NEAP 2005; nces.ed.gov) shortened and adapted for English children.
Across all experiments, only three probes (0.008%) never showed a signal higher than background, while 35,957, corresponding to 94.4% of the total number of target probes, successfully hybridized in at least half of the array experiments (see Figure S1 in Additional File 2).
Similar(52)
The first half of the arrays were then mirrored into the second half of the arrays (to simulate the symmetry in an FFT).
Half of the arrays were installed on the ceiling, and the other half were on the wall.
Probe sets with high (P>0.10) "detection P" values (Affymetrix algorithm) for more than half of the arrays from the group with higher mean expression were excluded from further analysis, which reduces the number of false positives [53], [55].
To ensure proper labeling efficiency the dyes for half of the arrays were swapped [ 13, 15, 43].
Probes with a DABG p-value ≤0.05 in at least half of the arrays were considered for statistical analysis.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com