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pisum genomic sequences revealed that 1,003 (81%) A. glycines B2 contigs had sequence similarity (E value cutoff of 1e-5) to Ac. pisum genomic sequences.
Seven contigs shared amino acid sequence similarities (54 to 100%) with transposases from the Bacteroidetes, confirming the results from the non-assembled data, two contigs shared sequence similarity (99 and 100%, respectively) with proteases from the Bacteroidetes, and seven contigs had sequence similarity with hypothetical proteins found in Bacteroidetes.
These proteins had sequence similarity to endonucleases, but their function in tsetse saliva is unknown.
Only 4.7% of hits had sequence similarity values less than 40%).
Notably, Px-0010 and Px-0024 had sequence similarity with bilin-binding protein (BBP), and Px-0019 had sequence similarity with takeout/JH-binding protein (JHBP), which we will discuss in detail in subsequent sections.
We hypothesized that gadr-1 might function redundantly in gastrulation with one or more genes that had sequence similarity.
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Except for bands 1, 2 and 3, all of the identified genera had sequence similarities of 98%% or higher (Table 5).
A database search revealed that AmFutsch had the highest sequence similarity with DmFutsch, and there was no other complete gene that had sequence similarities with DmFutsch.
Among the 1,380 gene clusters, 1,025 clusters had sequence similarities to Drosophila genes (P < 1e-05).
Cluster D contained 73 miRs, each of which had sequence similarities of 11 nucleotides in length with viruses.
The remaining Class II TEs composed 0.24% of the repetitive sequence, which had sequence similarities to the Tigger2, Blackjack, Looper, MER45R, and Zaphod TEs.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com