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The phrase 'had indeed changed' is correct and usable in written English.
You can use it when speaking about an event that has happened and has caused some kind of change in the past. For example: "The way we did business had indeed changed after the economic crisis of 2008."
Exact(19)
Afterward, Ms. Walker opined that cancer had indeed changed Mr. Russo.
I chuckled at this, but when I visited the next day the restaurant had indeed changed.
For the first month, I was very low and it seemed that my life had indeed changed - for the worse.
Feminism had indeed changed between the nineteen-seventies and the nineteen-nineties, and Garner's narrative registers, with often uncomfortable honesty, a generational shift.
On Saturday against 18th-ranked Pittsburgh, UConn had a chance to equal its conference win total from last season — and prove that things had indeed changed.
But in May 2004 he told a conference in New York that he had indeed changed his mind and become a believer.
Similar(35)
My "position" has indeed changed.
THE image has indeed changed.
Times have indeed changed.
The business has indeed changed, though.
"Circumstances have indeed changed," he wrote.
More suggestions(16)
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had even changed
had indeed amended
had undoubtedly changed
had indeed altered
had genuinely changed
had obviously changed
had effectively changed
had truly changed
had absolutely changed
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had already changed
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com