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Twelve major groups were recovered and corticioid fungi make up a major or important constituent in most of them.
In the phylogenetic tree with the highest average asteroid nodal support several monophyletic groups were recovered.
Four of the recognized species groups were recovered as monophyletic lineages with cox1: alpestris, loyolaea, diaphana, and semicolorata, each with posterior probabilities (PP) of 1.0 (Fig. 2).
Within Clade II, five monophyletic groups were recovered: central California clade (Clade A; grey in Figs. 2 3); Baja Pacific-Southern California clade (Clade BCDE; green, orange, magenta, and turquoise in Figs. 2 3); Gulf clade (Clade NS; red and blue in Figs. 1 3); Careyes clade (Clade F; brown in Figs. 2 3); and L. exotica.
Three divergent groups were recovered from our phylogenetic reconstruction.
Using this procedure, the shortest trees that placed Oligocene OTU's inside these crown groups were recovered.
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While many recent nodes were strongly supported in the best Bayesian tree from the anchored ITS alignment, few internodes along the backbone were supported, and only the Orbiliomycetes in the reference groups was recovered as monophyletic.
The structure of the bacterial subtree is not resolved and only few bacterial groups are recovered.
Some taxonomic groups are recovered: Xanthomonadales, Pseudonomaces as well as Pasteurelles.
Within eukaryotes we see a mostly well-resolved phylogeny with many of the major taxonomic groups being recovered as monophyletic.
Two monophyletic groups are recovered within Macroptilium, with several synapomorphies and good support values (Espert et al. 2007).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com