Exact(4)
We describe the derivation of a set of sub-type groupings derived from an automated parsing of alignments from PFAM and the SWISSPROT database, and use this to perform a large-scale assessment.
The groupings derived from K-means clustering using Euclidean distance metrics were used because they captured the previously identified SoxS-regulated genes and did not include a cluster containing RpoH-regulated genes, which are likely to be the result of secondary regulation mediated by SoxS through RpoH.
Using a network of tissue-tissue similarities computed using their transcriptional profile, we show that our network alignment p-values are consistent with groupings derived from transcriptional signatures.
The groupings derived from our molecular analyses are largely in agreement with similar colouration patterns of the pileus, lamellae, context and stipe, a lack of KOH reaction (except for C. aurora and C. aureopulverulentus) and basidiospore morphology in these taxa.
Similar(56)
This is unlikely to be a problem for the injury groupings derived for our analyses.
The themes and conceptual groupings were derived from phrases and comments from the transcripts, which grounded the findings in the data [21].
Functional groups lack the resolution of trait-based analyses, as such we hypothesised that functional diversity patterns estimated from functional groups would show less clear functional differences among catch groupings, than patterns derived from trait data.
The semantic groupings, or dimensions, derived from inter-factor correlations have similar trending as discussed in the preceding paragraph.
Taken together, these results argue that further examination of the patterns of intron conservation and distribution within the eukaryotic domain, like other shared derived characters such as gene fusions, insertions and gene replacements, can provide a valuable adjunct for evaluating proposed phylogenetic groupings and frameworks derived from sequence comparisons.
Pair-wise BLASTn and ClustalW2 [ 34] comparison among the sequences identified 11 paralogous sets of three genes corresponding to homeologous groupings of genes derived from the three ancestral genomes of wheat (Additional file 5: Figure S2).> -wrap-foot> aThe full set of complete caleosin sequences for wheat and rye can be found in Additional file 16.
Item groupings used in the MDP are derived from groupings reproducibly identified in factor analytic studies [ 48, 49].
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