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Group varieties of flowers, colours, and textures rather than placing them haphazardly.
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First, the overall food group variety is assessed by inclusion of at least one serving food per day from each of the five food groups (meat/poultry/fish/egg, dairy, grains, fruits and vegetables).
Finally we observed cases of homonymy grouping varieties presenting different pomological traits and different genotypes (six cases; Additional File 4).
Second we observed cases of homonymy grouping varieties presenting similar pomological traits but clearly distinct genotypes, such as the cultivars 'Aïn Hajla', 'Rhoudane', 'Kehla' and 'Biyadi', representing respectively two, six, eight, nine and six distinct genotypes.
A majority (78.75%) were identified as Group 1 varieties and clustered with temperate japonica control varieties, while Group 2 varieties showed evidence of indica ancestry.
For the ornamental group (six varieties), all combinations of k varieties among six were made as it was computationally feasible.
All Group 2 varieties share a single Japonica maternal-haplotype, while Group 1 varieties trace maternal ancestry to both Japonica and Indica.
MAF bins values for each group of varieties were calculated using hexbin R package.
Taken together, we can conclude that a genetically narrow range of maternal japonica parents were used in crosses with indica to generate Group 2 varieties.
Our findings clearly elucidate the colour inheritance pattern in rice that may facilitate to develop rapid chemical tests to identify/ group the varieties for genetic purity analysis.
For this reason, clusters were named according to the a priori group of varieties with the largest membership coefficient.
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