Similar(60)
Observed intensities on the diffraction image were classified as 'spots' by the program Spotfinder (Zhang et al., 2006), which identifies Bragg spots by considering connected pixels with area and signal height greater than user-defined thresholds.
This constraint tests whether the Katz centrality of a node is greater than the user defined threshold value or not.
The stopping criterion is that the sum of CFS probabilities of units in the district is greater than a user selected bound.
Through analyzing the field-testing data of projects and investigating of different residential consumers, it was found that compared to actual hot water consumption the solar domestic hot water systems were generally designed too large in capacity, which means the designed hot water demand is much greater than actual user consumption.
All repeats found with a copy number greater than the user specified value are stored.
For a motif to pass the filter, its support has to be equal or greater than a user pre-defined threshold (see [ 21- 24] for a comprehensive overview).
This generated a second.cdf file, 'Rep12.cdf', containing probe-pairs in which the perfect-match probe had a gDNA hybridisation intensity greater than the user defined gDNA hybridisation threshold, based on replicates one and two.
For example, the following three criteria may be requested: (i) location on a specific chromosome, (ii) overlap with DHS regions and (iii) support greater than the user defined threshold.
This generated a new.cdf file, 'Rep1.cdf', containing probe-pairs in which the perfect-match probe had a gDNA hybridisation intensity greater than the user defined gDNA hybridisation threshold, based on replicate one.
This generated the final.cdf file, 'Rep123.cdf', containing probe-pairs in which the perfect-match probe had a gDNA hybridisation intensity greater than the user defined gDNA hybridisation threshold, based on replicates one, two and three.
Probe-pairs from the gDNA.cel files were selected using a.cel file parser script [ 31] which produces a probe-mask file (.cdf) compatible with a range of microarray analysis packages and containing only probe-pairs in which the perfect-match probe has a gDNA hybridisation intensity greater than the user defined gDNA hybridisation threshold [ 22].
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Justyna Jupowicz-Kozak
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