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Se_At4 also associated with tuf b1 was found in a single grapevine sample from Klosterneuburg.
Strain CPsM4_At2 found in a single grapevine sample in Rust had tuf and secY sequences identical to CPsM4_At1, but differed in vmp1 and stamp.
In our study, deep sequencing of a FD-infected grapevine sample followed by three assembly approaches allowed us to obtain an average of 8300 FD-mapped reads per library, which represented a better coverage of the reference transcriptome.
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For this purpose, grapevine samples containing single or mixed infections of Grapevine leafroll-associated virus-1, -2, -3, -4, -7, -9, Grapevine fanleaf virus, Grapevine rupestris stem pitting-associated virus, Grapevine virus A, and Grapevine virus B were used.
Thirty-four grapevine samples from various origins were tested by the macroarray, RT-PCR and ELISA.
The method was validated by testing 57 grapevine samples from Iran and showed reliability and high sensitivity.
A total of 113 grapevine samples were collected in Japan, most of them from different cultivars.
Additional file 12: Correlation matrix of the 25 grapevine samples used to define the miRNA atlas.
Field-grown grapevine samples were collected in Cocconato, Asti province (Piedmont, north-western Italy), in summer August 200909.
Expression of the selected FD genes was examined in three FD-infected grapevine samples: sample 120, B68 and B75.
The most common types were CPsM4_At7 and CPsM4_At13, with the former, being found in bindweeds and in 9 % of the grapevine samples and the latter, being found in 9 % of the grapevine samples.
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