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The remaining grape models generally possessed an incomplete R2 repeat, so were not included in this analysis.
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Grab a Go Grape model.
Role and potentials of nuclear energy system in the energy options are discussed from the viewpoint of sustainable development with protecting from global warming by using the energy module structure of GRAPE model.
The grape gene models dataset contains 30,434 predicted gene loci [ 18].
None of the grape gene models were grouped within the Arabidopsis 'glucosinolate' clade (Additional file 4).
Enrichment of 3'-ends of transcripts was verified by mapping 454 reads against grape gene models (Additional file 3).
Grape protein models with a complete R2R3 domain (91 sequences), seven characterised grape proteins and 126 Arabidopsis homologues were included in the first phylogeny.
Mapping of the reads to grape gene models [ 18] of at least 1,000 nt in length, confirmed that the two libraries were representing the 3' ends of transcripts.
In most comparative genomic analysis, three representative lineages of flowering plant species are incorporated in most analysis: Arabidopsis (a model plant for annual herbaceous dicots), grape (one model plant for perennial dicots) and Oryza sativa (a model plant for monocots).
Seven Arabidopsis MYB genes and the grape gene model GSVIVT16947001 could not be positioned in these groups.
Assignment of 454 unigenes, VvGI 6.0 TCs and GrapeArray 1.2 targets to grape annotated gene models was performed using custom scripts (Additional file 3).
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