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We evaluated the models generated by default settings in HMMER, entropy settings and the models with augmented training sets.
Therefore, all putative SNPs detected by default settings were analysed.
Finally, "privacy by default" settings should become standard for all software used for electronic communications.
Multiple protein sequence alignment for each orthologous group was obtained by ClustalW at default settings.
The computation and modeling of Bayesian and SVM are performed by using RapidMiner with default settings.
Specters were grouped with default settings by a ProGroup algorithm build-in to ProteinPilot.
Masked proteomes were created by running seg at default settings [ 25].
The consensus sequences were inferred by using Mesquite with default settings.
You can reset the home screen layout to default settings by going to Settings > General > Reset > Reset Home Screen Layout.
For PS, cNrGA, and HCQPSO, they are initialized by the default settings as in their papers.
SNPs were identified by applying default settings in Mauve software [39].
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