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The point here is not the biological validation of specific protein changes; rather this goes to the overall reliability of the dataset.
We went to our dataset to see if seemed to show a trend similar to the genes in our hypoxia pathway.
Ultimately though, the success of the program is going to be judged on how many datasets are released and how creative the tech community is with it.
At threshold 0 (where MowgliNNI = Mowgli, 5510 duplications, 2494 transfers and 12190 losses were predicted on the whole dataset; going to threshold 80, these numbers dropped to 4602 duplications, 1676 transfers and 8133 losses, i.e. values that are much closer to the 4535 duplications and 8260 losses contained in the true reconciliations.
Finally, we went back to the full dataset (N = 390) to test whether the positive association between Pavlovian learning ability and subsequent survival time in hyperoxia also influenced the olfactory acquisition (learning) curves of the worker bees.
Can the authors use one of the publicly available datasets to prove this proposition (e.g. the raw movie frames and other metadata of the proteasome dataset, which goes to 2.8A resolution, are available on EMPIAR)?
-3: what new government datasets are going to be made available for people to build commercial services on?
For starvation stress, only genes with a twofold or greater fold change were included in the GO analysis to reduce the dataset to a manageable number.
In order to characterize the spider transcriptome functionally, we explored the level II and level III GO annotations for each of the three GO domains in terms of frequency with which each GO-term was assigned to the dataset.
Additionally, the 'nucleosome assembly' BP 6334 GO category is quite overrepresented in going from OO to the WBC datasets (3 → 14).
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