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By combining GO Slims with Boolean Operators, AGENDA facilitates complex queries of GO data in a step-by-step manner whereby the results of each step can be used principally as a starting point for follow-up steps.
All GO data in this study comes from GO Consortium [ 19] and literature [ 14].
Functional categories were determined based on GO data in the TAIR database [ 28]. 21% of the genes are linked to translation, 6% to carbohydrate metabolism and 5% to development.
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For example, commands to split input messages into lines, words, Go function data definitions in source files, etc. are included in Clive.
Of these, majority (93.23%) was categorisable by the InterProScan determined functional protein motifs and the rest was categorised by other means [gene ontology (GO), data search in other resources such as NCBI, UniProt, GeneDB and referred publications].
The GO data are represented in Figure 7.
Using the recovered GO data, and a starting node in the hierarchy, the script then looks for nodes below the starting node in the hierarchy for which GO data was recovered in the transcriptome data in order to determine the coverage of the sub-hierarchy.
In either case, contextualization of unbound-ligand 3D-structures, structure-activity relationships and protein co-crystallography data go hand-in-hand and are synergistic.
A pathetic, manic auditioning actor named Wayne Jim Fyfee), who's gone about as far as he could go in data processing, is mistaken for a spy.
The web interface provides a browse feature that uses filters to go through data displayed in a tabular format without specifying a search query.
So developers and data scientists can go from useful data in any shape, any form to useful applications in a matter of minutes.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com