In some case, our method approximates the solution more rapidly than Mainge-Moudafi method, in some other case it happens the contrary and in some other cases, both methods give the same sequence.
In addition, PCRs of genomic DNA gave the same sequence plus an intron of 2092 bp inserted between nucleotides 56 and 57 (Accession number FN429652, Figure S1).
They gave the same sequence, except for 1 3 SNPs (not shown), indicating that their presence is a common characteristic of the species.
Perhaps it is not surprising that strains of a given virus have the same sequence similarities even when it contains a miR seed sequence (Table 3, Fig. 4).
The lower coverage of capillary-based EST sequencing given the same number of sequenced bases is attributed to biases implicit in the cDNA cloning process.
Briefly, CAI of a gene is the geometric mean of RSCU of all codons divided by the highest possible geometric mean of RSCU given the same amino acid sequence.
There is no reason to assume a superiority of either platform given the same quality of probe sequence design.
Non-annotated sequences that, at the amino acid level, and in the homeodomain region, were identical to annotated sequences were also used, and were given the same annotation as the annotated sequence(s).
Given the same model of Next Generation Sequencing instrument (Illumina GA IIx) was used in both sequencing runs, the most parsimoneous explanation for the difference in ORP mismatch rates is the difference in the Q-score calibration of the two instruments.
C. stygia transcripts deemed orthologous (based on sequence similarity) to D. melanogaster sequences were given the same name (e.g. DmelIR8a, CstyIR8a, DmelOrco, CstyOrco).
