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Given a set of sites, the best signal quality received from at a position, denoted by, is defined as (4).
Given a set of sites on a plane (in this case, the centers of mass of the molecules at a surface), a cell is assigned to each site, such that the points within a cell are closer to that site than to any other.
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Given a set of genomic sites, we compute for each site the maximal energy value within a 200-bp window centered on the point.
Given a set of known binding sites for a specific transcription factor, it is possible to build a model of the transcription factor binding site, usually called a motif model, and use this model to search for other sites that bind the same transcription factor.
Given a set of sequences and the predicted sites for both PWMs, we calculate the FR(B|A), the tendency of sites for TF B to co-occur with those of TF A, as follows.
Hess et al, 2006 developed a similar MLR algorithm for predicting the primary cancer site (nine sites) given a set of metastases.
This set of DTs can be used as a decision support system to select and evaluate potential sites, given a set of locational requirements.
Similarly, suppose we are given a set of n aligned PWMs W each with w sites.
Given a set of gene alignments, we kept the first K sites from each alignment, allowing K to vary between 10, 25, 50, 100, and 200.
In other words, given a set of evidence introns, GeneID tries to join potential exons that have splice sites compatible with these introns.
C given a set of parameters.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com