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Only GOPred was able to give annotations for RGL4 such as guanyl-nucleotide exchange factor, small GTPase binding that were similar to those reported in the literature.
It is also important to note that we do not merely give annotations but also provide a measure for each functional class that states how probable it is that the query protein is a member of that class.
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Microarray data is also utilized to give annotation of REGs, that have been predicted as cis-regulatory elements dependent of promoter position in our previous analysis.
Given annotations b i and b i+1, the computation of b j is performed by a 3D reconstruction of those given annotations and the projection onto the image plane of the interpolated annotation in space (B j ).
To retain the coverage obtained with chemical names as inputs, while minimizing the adverse effects it has on specificity, we introduced a confidence score that gave annotations returned for names a lower priority.
The given annotations of genes are extended to explicitly include the ancestors.
The submitted high-quality ESTs were provisionally given annotations of each top BLAST hit compared with nr (version 11.06.2007) [ 84].
If the model with segments has no annotation error, then we say that the segmentation is consistent with the given annotations.
We used the given annotations to generate a file of L. kluyveri intergenic sequences by filtering out all sequences with feature type 'gene' or 'LTR', or 'gap'gap
This concept of a multigene family is rather new, since in the multigene family construction we did not rely exclusively on given annotations.
The estimated value is the proportion of a given annotation class seen in the set of hit SNPs divided by the proportion seen in the set of non-hit SNPs.
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