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The first one applies a "gene-centered perspective", as developed in the "GEO profile" or "SOURCE" web interfaces [3].
Finally, the normalized expression data from the GEO profile was shown and a Z-test was used to test for differences.
Comparison of the intensities of exon 1/2 and exon 2/3 junction probes of Grp78 in 52 samples included in this GEO profile revealed that the HL-60 and chronic myeloid leukemia (CML) K562 cell lines have the highest probability to express the intron 1 retention form of Grp78, while adult organs such as the heart, skeletal muscle and cerebral cortex are the most unlikely (Figure S3).
These were further supported by microarray analysis in melanogaster from GEO profile [ 29].
Error bars in Fig. 5 represent standard deviation as determined by GEO profile MAS5 signal intensity.
HSD and PJT helped and supervised over the analysis and upload of microarray data on GEO profile.
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To identify the potential reason why CD177-deficiency resulted in significantly fewer neutrophils in the skin early after bacterial infection, we searched GEO profiles and found that deletion of IKKβ led to a significant increase in CD177 expression from neutrophils (Fig. 6C).
Among these few studies, only one to the best of our knowledge was deposited as accessible GEO Profiles [8].
Unfortunately, there are little data about Amy expression in the germline for the species studied here, except for D. melanogaster, C. elegans and mammals (GEO profiles: www.ncbi.nlm.nih.gov/sites/entrez?db=geo; flyatlas.org).org
Among them, Gene Expression Omnibus (GEO) provides most profuse microarray expression datasets presented with the function of GEO DataSets, GEO Profiles, and GEO2R Analysis [ 13].
In order to find gene expression profiles in microarray analysis, GEO profiles from NCBI [ 29] were searched for each member of FREPs from D. melanogaster.
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