Sentence examples for genuine alignments from inspiring English sources

Finally, we compared the computational performance of FastTree, RAxML, and PhyML, on genuine alignments.

Nevertheless, for both simulated and genuine alignments, FastTree 2 is slightly more accurate than a standard implementation of maximum-likelihood NNIs (PhyML 3 with default settings).

Specifically, in simulations, FastTree 2 recovers a higher proportion of true splits, and on genuine alignments, FastTree 2's topologies tend to have higher likelihoods.

To confirm that FastTree finds good topologies for genuine alignments, and not just in simulations, we tested it on 16S ribosomal RNAs and on protein families from COG.

While it is difficult to assess how many of TopHat's 19 722 newly discovered junctions are genuine, TopHat's alignment parameters for this run were quite strict: only exact matches were reported for splice junctions, and reads were required to have relatively long anchors on each side of the splice site.

Although this is higher than error rates inferred in other sequenced avian genomes, such as the 0.05% rate estimated for zebra finch [ 15], it is likely to overestimate the true error rate, because some substitutions will reflect mis-alignments or genuine point mutations.

The simulated protein alignments and the genuine COG alignments were described previously [2].

Female leaders offer transparency, collaboration, genuine dialogue, clear values and the alignment of words and deeds, which are cherished by employees and stakeholders, according to the Ketchum survey.

An unknown fraction of these SNPs is probably due to reverse transcription and amplification errors during library synthesis, poor quality sequence and assembly and alignment errors rather than genuine polymorphisms.

In response to the volume of data generated by these genome-scale studies, a host of software tools has been developed to aid in distinguishing genuine somatic mutations from germline variation, alignment artifacts, and inherent MPS errors [ 7- 11].

To measure the quality of the resulting trees, we measured the topological accuracy on simulated alignments and the likelihood on genuine biological alignments.