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(DE) Mr President, ladies and gentlemen, data protection has high status in the EU.
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Data normalization was performed using Bioconductor (Gentleman et al. 2004) and custom Perl scripts.
Appropriate curated genomic data resources are available in Bioconductor (Gentleman et al., 2004) through the curatedCRCData, curatedBladderData and curatedOvarianData (Ganzfried et al., 2013) packages, and in other common cancer types through InSilicoDB (Taminau et al., 2011).
Microarray raw data were analysed using Bioconductor in R (Gentleman et al., 2004).
Data were processed using the Bioconductor software suite (Gentleman et al, 2004).
The use of R/Bioconductor (Gentleman et al., 2004) for analyses and HDF5 for data storage provides platform independence and allows scientists to interact with their data on multiple operating systems.
Data analysis was carried out using Bioconductor in R (Gentleman et al., 2004).
Scatter plots of phenotypic data were generated using R version 2.13.2 (Ihaka and Gentleman 1996).
Microarray data were analyzed with R bioconductor package (Huber & Gentleman, 2004) and processed with affy and limma packages.
Data analysis was performed using the R statistical software package (Gentleman, & Ihaka, 2015) and IRT analysis was performed using the Itm package (Rizopoulos, 2006).
All data analysis and visualizations were performed using R (Ihaka & Gentleman, 1996), unless otherwise indicated.
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