Sentence examples for genotypic probabilities from inspiring English sources
The inference method produces three genotypic probabilities for Sib2 (or subsequent siblings): p(Sib2 AA|Sib1 genotype), p(Sib2 Aa|Sib1 genotype), and p(Sib2 aa|Sib1 genotype) for each SNP, which we call the SNP probability vector.
Genotypic probabilities were computed every 2 cM.
The genotypic probabilities of both generations were then combined and the resulting file was considered as a unique F2 population and further imported into R/qtl.
Finally, to detect QTL with epistatic effects, we first imported the genotypic probabilities for each 1 cM calculated by GridQTL into R/qtl using outbred.qtl (R package; Nelson et al. 2011).
Originally the term "segregation analysis" referred to the determination of the mode of inheritance of a phenotype but in recent decades it has come to include the inference of genotypic probabilities in pedigreed populations.
Each element is represented by two bits covering the dosage model encoding 0, 1, 2. When elements are recorded in floating-point numbers as in genotypic probabilities, this step is bypassed by partitioning into smaller size files where the local memory limitation would not be of a constraint.
Suspicious genotypic scores identified from the genotype probabilities table calculated by JoinMap, were verified and edited when necessary.
False-positive rate was measured by using the Samtools-derived genotype probabilities for calling genotypes and then searching for the following genotypic pattern among the sets of five, four, three, and two genotypes: If every genotype has reads with the alternate base at the site of interest, then the called SNP is a false positive.
We assumed the Hardy-Weinberg equilibrium in calculating the genotypic prior probabilities of ref-hom, heterozygous and alt-hom according to pi.
Let P x,y ) represents a genotypic joint probability mass function, whose entries are the probability of genotype combinations from both SNPs.
The 16-loci genotypes were analyzed for genotypic identity (Pgen) and sibling probability (Psex) using GenClone version 2 (Arnaud-Haond and Belkhir, 2007).
