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This study also showed the advantage of using a large genotypic database to predict the epidemic strain of H5N1.
Using a genotypic database of 304 field-sampled individuals from all populations on the major islands, we performed assignment tests using Rannala and Mountain's approach [ 14] (as implemented [ 15] in GENECLASS2) and Pritchard et al.'s method [ 16] (as implemented [ 17] in STRUCTURE 2.1).
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Individual sequence information to adjust qPCR assays for UsRNA, vRex, and vDNA, was obtained from the SHCS genotypic drug resistance database (HIV-1 pol-sequences) [70].
As in the acute group, patients in the chronic group participated also in the Swiss HIV Cohort Study (SHCS) and HIV-1 pol-sequences were available from the SHCS genotypic drug resistance database [70].
PhenoGO draws concepts from a number of different genotypic and phenotypic databases (UMLS, OMIM, etc) with different schemata.
The database includes genotypic, phenotypic and polymorphism data.
Therefore, a comparison between what we found with the 1000 Genomes Project genotypic data and the SNPinProbe database [32] would allow us to evaluate the potential influence of novel SNPs on our previous gene expression datasets [8], [9] and the results based on those expression data (e.g., pharmacogenomic discoveries [16], [17]).
Our sample of 156 captive individuals were assigned to their population(s) of origin based on mtDNA haplotypic and microsatellite genotypic data relative to reference databases including all extant species and the extinct species from Floreana (Table S1).
The CEREALAB database aims to store genotypic and phenotypic data obtained by the CEREALAB project and to integrate them with already existing data sources in order to create a tool for plant breeders and geneticists.
GeneLink is a platform-independent, Web-accessible Sybase database that can manage complete genotypic, phenotypic and pedigree data for genetic linkage or association studies.
MLST, however, has the advantage that isolate information is available alongside genotypic data in an established, publicly accessible database [ 23, 24].
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