Sentence examples for genotype basis from inspiring English sources

The distance between an individual and its closest relative and the expected prediction error variance (PEV) were considered as factors affecting the imputation accuracy on an individual genotype basis.

For all methods, average median imputation accuracies on an individual genotype basis R l 2 – – were not always homogenous across population sub-groups as illustrated in Figure S5, which shows individuals plotted according to the first two principal components of their marker genotypes and color coded according to their imputation accuracy.

However, when excisions and insertions were considered separately on a per-genotype basis, and methylation alteration being dissected into specific types, i.e., CG or CHG, the correlation coefficients were statistically significant in four cases.

Repeatability on a genotype mean basis ranged from 0.62 to 0.97.

However, the repeatability of these derived traits (RTLL and RMLL) for both M. phaseolina and F. thapsinum on a genotype mean basis was lower than the corresponding disease severity measures (TLL and MLL) for both pathogens.

The model used to estimate repeatability on genotype mean basis in the combined data was modified by nesting the random genotype effect within environment and by modeling the genotype environment effect (G) matrix as unstructured, thereby allowing estimation of unique genetic variance within each environment and a unique genetic correlation between each pair of environments.

Variance estimates of the selected models were used to estimate broad-sense heritabilities on an inter-annual genotype mean basis, defined as H 2 = σ G 2 / σ G 2 + σ e 2 / n, where σ G 2 and σ e 2 were the genotypic and residual variances, respectively, and n the mean number of replicates (n = 1 when year effect was significant, otherwise n = mean number of replicates with non-missing data).

In the output layer, the s genotype-derived basis functions, resulting from the hidden layer, are also linearly combined by using the w21, w22,…, w2 s weights and an output intercept b.

Repeatability on genotype mean-basis was estimated as, H ^ c = 1 − σ P P E 2 2 σ ^ G 2,where σ P P E 2   is the average prediction error variance for all pairwise comparisons of lines and σ ^ G 2 is the estimated genetic variance (Cullis et al. 2006).

We detected ferret coronaviruses in 44 (55.7%) of 79 pet ferrets tested in Japan and classified the viruses into 2 genotypes on the basis of genotype-specific PCR.

The isolate was initially suspected to possess multiple CTV genotypes on the basis of PCR-amplification with genotype-specific primers (data not shown).