To address this need, we developed Neisseria Base (NBase), a comparative genomics database and genome browser that houses and displays publicly available N. meningitidis genomes.
The alignments of ESTs on the cucumber genome can be viewed on the cucumber genome browser in the Cucurbit Genomics Database [ 24].
In this study, we describe our construction of the Soybean Functional Genomics Database (SFGD) using Generic Genome Browser (Gbrowse) as the core platform.
We collected ten gene expression datasets [ 74- 83], each with more than 50 samples (conditions), from the Yeast Functional Genomics Database [ 84] and the Saccharomyces Genome Database [ 68].
More detailed QC results can be shown in Additional file 3. We used watermelon reference genome (cv. 97103) version 1 from the Curcurbit Genomics Database.
For miRNA analysis we used miRBase [ 42, 43], Tomato Genomic Resources Database [ 44, 45], Tomato Functional Genomics Database [ 46], and Rfam database [ 47, 48].
All the genomes of these plant species are accessible at Phytozome comparative genomics database, and most of them also at GreenPhylDB comparative genomics database.
Gene Logic creates a genomics database and marries it with software tools, Mr. Lee said.
Stajich, J. E. et al. FungiDB: an integrated functional genomics database for fungi.
The normalized expression data are also available at the Tomato Functional Genomics Database (TFGD; http://ted.bti.cornell.edu/) under the experiments D015 and D016.
In the process, DeCode generated a massive genomics database, as well as expertise in collecting and analyzing huge volumes of data, which it now hopes to capitalize on.
