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Finally, the presence of a co-purified bacterial genome in the library also permitted the first calculation of the size of a foraminiferal genome by molecular methods, and statistical analysis of sequence from different genomic sources indicates that low-complexity tracts of the genome may be endoreplicated in some stages of the foraminiferal life cycle.
Based on BLASTn search against the cucumber genome and hairpin structure prediction, we identified genomic sources of miRNA and potential precursors for the totality of the new and candidate csa-miRNAs.
In CGH, two genomic sources are labeled with two different fluorescent dyes and hybridized in a single reaction vessel.
This web-based platform aims to the genomic sources in RefSeq databse, which is easy to operate.
Although established resources already exist with respect to predicted operons from genomic sources (9, 10), we are not aware of any analogous tools that operate at the metagenomic level.
In perspective, by exploiting orthologous genes and multiple genomic sources, multi-species prediction can be applied to annotate poorly annotated species and discover new functions for uncharacterized genes in model organisms.
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The integration of this plasmid into the MiMIC elements using a genomic source of PhiC31 is very efficient.
Estimate the probability that each alignment represents the genomic source of the read, using a probabilistic model.
The remainder matched genomic DNA to better than 97%, indicating that the genomic source contexts of almost all cDNAs were identified (see Additional file 1).
When a dataset contains a read with such an R-mer, its true genomic source position is ambiguous; hence, the read is usually discarded.
Statistics for the assembly process are shown in Additional File 2. Assembled contigs were assessed to determine the likely genomic source for the sequence data.
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