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Surprisingly, comparative sequence analysis showed that Upland cotton is much more diverged from G. raimondii at the genomic sequence level than expected.
Recently, the increase of complete or partial genomic sequence of reference plant species from different families and the development of the BAC clones sequencing in experimental species gave the opportunity to perform direct comparisons at the genomic sequence level.
Regardless of potential epigenetic differences between wMelCS and wMelPop, however, our results demonstrate that endosymbiotic bacteria that differ very little at the genomic sequence level can cause extremely different phenotypes in their hosts.
There were a further 6 unique ETS captured by exon trapping (ETS_21696, ETS_25582, ETS_16037, ETS_15328, ETS_25303, ETS_26263), which also seem to contain at least two adjacent transcripts and are interrupted by intergenic DNA sequence on genomic sequence level.
Connecting animal phenotypes associated with the QTL anchored on genomic sequence level with putative underlying genes would accelerate the identification of sequence polymorphisms and gene variants and the development of SNP markers for validation of association substantially.
Although the general hypothesis of an increased molecular flexibility in the cold is widely accepted, the results of thermal adaptation are still difficult to detect at proteomic down to the genomic sequence level.
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In the present study, two variants of STAT1 genes (RbSTAT1 and RbSTAT1L) were identified from rock bream and characterized at the cDNA and genomic sequence levels.
With the increase in available genomic sequence data, more laboratories have looked at collinearity at the genome sequence level.
Delineation of the most recent duplication events at the genomic-sequence level, and particularly sequences located at their junctions [ 35], may provide insight into their mechanism of origin [ 15, 17, 36, 37].
Moreover, it appears that an extensive element exchange has occurred between the A- and D-subgenomes of Upland cotton during the process of and/or after polyploidization, thus leading to a higher similarity between the two subgenomes at the genomic element sequence level.
One transcript might have multiple genomic sequence similarity levels (in different regions of this transcript) that were not consistent.
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