Sentence examples for genomic sequence alignment from inspiring English sources

Wu, T. D., Reeder, J., Lawrence, M., Becker, G. & Brauer, M. J. GMAP and GSNAP for genomic sequence alignment: enhancements to speed, accuracy, and functionality.

Applications such as information retrieval, text classification, social network models, machine translation, genomic sequence alignment, word meaning extraction, and speech recognition.

Figure 5 Genomic sequence alignment of the 5′ region of Os04g27430.

By genomic sequence alignment, miR-499 is completely conserved throughout evolution with the exception of a single nucleotide change in chicken (Fig. 1B).

The system uses the Grid computing paradigm [46] for the execution of computationally intensive steps involved in the TFBS finding process: genomic sequence alignment and TFBS searching.

The established canine cDNA sequence was used for genomic sequence alignment with the current CFA 13 sequence to characterize the exact gene structure (Figure 4).

Indels were identified based on the human-mouse pairwise genomic sequence alignments downloaded from the University of California, Santa Cruz (UCSC) Genome Browser http://genome.ucsc.edu/ [ 36].

The model is designed for multilocus genomic sequence alignments, with one sequence sampled from each of the three species, and is formulated using a Markov chain representation that allows use of matrix exponentiation to compute analytical expressions for the probability density of coalescent histories.

Alignments were obtained using MultiPipMaker, a web-based tool for genomic sequence alignments http://bio.cse.psu.edu/pipmaker[ 53, 54].

The results identify several statistically significant fragments in both the ORF alignments and the genomic sequence alignments (Table 1).

Pairwise genomic sequence alignments for D. melanogaster against D. yakuba or D. simulans (http://hgdownload.cse.ucsc.edu/downloads.html fruitfly) were used to obtain alignments of all exonic bases for each gene model.