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Since another goal of this analysis was to determine the genomic relationships between common bean and soybean genomes, we next limited the analysis to the best two soybean hits for each common bean sequence.
The consensus melon linkage map derived herein from two historic maps possesses the largest number of cross-species cucumber molecular markers currently mapped in the melon genome and provides a greater understanding of genomic relationships between these two important Cucumis species.
Seijo, G. et al. Genomic relationships between the cultivated peanut (Arachis hypogaea, Leguminosae) and its close relatives revealed by double GISH.
The GBLUP method exploits the genomic relationships between training population and testing population to predict the genomic values for unknown individuals without estimating marker effects.
This indicates that MLSA results are also highly representative of genomic relationships between E. cloacae complex isolates.
Moreover, the PFGE analysis not only confirmed the close genomic relationships between known pairs of strains (IL594 and its plasmid-free derivative IL1403 [33], S86 and its [Lac]- spontaneous derivative S86-B), but also identified unexpected close relatedness between some other pairs of strains, such as LD01/LD02 and UCMA5713/UCMA5733.
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However, these algorithms are not optimized to discern the genomic relationship between organisms in a comprehensive way, since they ignore or minimize the effects of horizontal gene transfer (HGT).
Based on the sequences obtained, the genomic relationship between the analyzed strains was determined.
We have examined the genomic relationship between STAT1 binding and regulated transcription using multiple tiling microarray and chromatin immunoprecipitation microarray (ChIP-chip) experiments from public repositories.
The GBLUP model uses all markers to estimate breeding values on the basis of the genomic relationship between animals rather than based on individual marker effects [ 31].
As for the CGH analysis, the LOH patterns also pointed to a complex genomic relationship between initial and recurring tumors not compatible with a simple genetic progression model.
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