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It was estimated that the M. musculus B6 strain, for which the whole-genome sequences are available, has about 60 copies of an Sp100-rs gene, but this genomic portion is unassembled (Mouse Genome Sequencing Consortium 2002).
Moreover, the minke whale completely lost the K33a and K33b genes, and the K39 and K40 are pseudogenes, but this genomic portion of cluster is missing in the dolphin genome, so we cannot know whether it is a minke specific loss or if it is shared by both cetacean species.
Similar to drm mutants, no effect on methylation was recently reported for P. patens rdr2 mutant35, which we validated here while substantially expanding our analysis to a larger genomic portion (80 vs. 20%; Supplementary Fig. 8a and Supplementary Table 2).
The distance from the retroelement-specific primer binding site within the LTR to the genomic portion of the fragment ranged from 50 bp to 106 bp.
Interestingly, 13 of these genes, including the mcr operon, are clustered on a small genomic portion (~16 Kb) of M. luminyensis and " Ca. M. alvus".
The beginning, supposedly exonic portions of the amplified fragments revealed a high degree of homology with the mRNA sequences used to construct the initial alignment, suggesting that the sequenced genomic portion was indeed intron 7 of the 6-Pgd gene.
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Occurrences of such motif oligonucleotides should differ from the occurrences expected from the mononucleotide composition in the respective genome and may differ among genomes and among genomic portions within a single genome.
The G + C content (%GC) is a fundamental characteristic of individual genomes and is used for a long period as a basic phylogenetic parameter to characterize individual genomes and genomic portions.
The occurrence of such motif oligonucleotides in the genome should differ from the level expected from the mononucleotide composition in the respective genome and may differ among genomic portions of one genome.
The occurrence of such motif oligonucleotides should differ from the level expected from the mononucleotide composition in the respective genome and may differ among genomic portions within one genome.
Microarray data obtained by comparing the SS9, 3TCK and DSJ4 genomes confirmed that these genomic portions are absent in both the 3TCK and DSJ4.
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