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Recent genomic sequencing and annotation of several Drosophila species genomes suggested that genomic patterns of GC biased codon usage are widely shared within the genus.
Plants share a common history of successive whole-genome duplication (WGD) events retaining genomic patterns of duplicate gene copies (ohnologs) organized in conserved syntenic blocks.
Recently, large-scale genotyping studies [ 1, 4- 6] have investigated the genomic patterns of LD in the human genome and have found considerable variation in its values, even for SNP pairs that are separated by identical physical distances.
Detailed procedures for constructing an allele frequency biplot are described in Appendix C. We characterize genomic patterns of CPA based on the three genome projects, the Taiwan Han Chinese Cell and Genome Bank [ 20], the Academia Sinica Multi-Center Hypertension Genetic Study, and the International HapMap Project [ 7- 10].
Here, we use published genomic polymorphism data from the model plant Arabidopsis thaliana as well as the recently sequenced genome of the closely related outcrosser Arabidopsis lyrata to characterize genomic patterns of polymorphism and divergence and test whether there is evidence for recurrent selective sweeps with effects on neutral polymorphism across the genome in Arabidopsis.
Genomic patterns of homozygosity in worldwide human populations.
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Although the genomic pattern of nucleosome positioning is broadly conserved, quantitative aspects vary over evolutionary timescales.
Both the optimal marker density for genome scans in case-control association studies and the appropriate study design for the testing of candidate genes depend on the genomic pattern of linkage disequilibrium (LD).
During the outbreak period, the genomic pattern of the outbreak strain has stayed virtually unchanged with regard to drug resistance, IS6110 restriction fragment length polymorphism and spoligotyping patterns.
Finally, following recent reports that most methylation variable positions are located outside of CpG-islands [19], we explored the genomic pattern of methylation variable positions in relation to CpG density.
The genomic pattern of all isolates was identical.
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