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Baker, B. J. et al. Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea.
[HICOMB'16] A. Bahmani, A. Sibley, M. Parsian, K. Owzar, F. Mueller "SPARKSCORE: LEVERAGING APACHE SPARK FOR DISTRIBUTED GENOMIC INFERENCE", The 15th IEEE International Workshop on High Performance Computational Biology (IPDPS'16), May 2016.
Comparison of the size of rice and Ae. tauschii short arm chromosomes reveals a genomic inference between the two species.
Furthermore, we note that no tetrathionate reducing activity has been observed for any Sulfobacillus species, and it is impossible to say what the function of this enzyme is based on genomic inference alone at this time.
Although these studies demonstrate a link between MSA and the accuracy of genomic inference, they have not addressed the general statistical properties of phylogenetic inference under an unknown MSA.
As the wealth of available genomic data grows exponentially, methods that reduce, generalise and interpret data are in greater demand than ever, and as such we see prolific application of this form of genomic inference in the future.
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The PARADIGM method integrates diverse high-throughput genomics information with known signaling pathways to provide patient-specific genomic inferences on the state of gene activities, complexes and cellular processes.
Novichkov, P. S. et al. RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
Osada, N., Kohn, M.H. & Wu, C.I. Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races.
Meanwhile, there are several cases wherein such genomic inferences do not clearly make sense.
Pooling population samples on a single capture also provides a cost-effective method for SNP discovery that is invaluable for population genomic inferences of demography and selection.
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