We found that SNP calling was even across the genome and genomic feature types.
These experiments have allowed us to analyse the presence of a particular genomic feature at the genome-wide scale.
WTA was then used to enumerate reads aligning to each genomic feature in the lysogen genome.
There are several existing database schemas for storing genomic feature data, generally tied to different genome browsers.
These normalized genome-wide count files were then interrogated by genomic feature (e.g., CpG islands, CpG shores, promoters).
The results of the protein and genomic feature searches are localized to the relevant protein and genome sequences, respectively.
SNPs were assigned to genomic feature groups and gene classes according to the sorghum genome annotation (http://www.phytozome.net/sorghum).net/sorghum
Another genomic feature analyzed was repeat elements.
This genomic feature is highly prevalent: about 13% of human genes overlap with CNVs [47].
Our genomic feature model recapitulates the conception.
Of course, extremely high-density genomic feature data is inappropriate for a general genomic feature database.
