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This sequence, expressed and regulated only in T. aestivum, is a typical example of a gene likely located on the D genome or regulated by genomic elements of D genome (see below).
Endogenous retroviruses (ERVs) are genomic elements of retroviral origin that are present in the genomes of almost all vertebrates.
These represent novel genomic elements of likely functional relevance.
The presence of all genomic elements of the ATXN3 gene allows these mice to exhibit alternative splicing of both transgenic (human) and endogenous (murine) ataxin-3.
These pseudogenes represent novel genomic elements of potential functional relevance.
The GBrowse package, which is commonly used to visualize genomic datasets, remains in BRAD V2.0 to view bulk genomic elements of the Brassicaceae species.
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Further study of the region encompassing these SNPs, including the genomic element of interest, is needed to examine the mechanism by which variation in PLA2G4C influences birth timing.
In this study we present a CRISPR-based knockout strategy with general applicability to almost any genomic element of <1 Mb.
The symbiosis island, which exhibits features of horizontally transferred genomic element of low G+C content, also contained transposon insertions at rates similar to other chromosomal region (Fig. 5 grey line).
We selected a total of 100 clusters and single tags combined for ChIP-based validation of p53 occupancy based on either the presence of a putative p53 binding site as determined by the p53MH algorithm, or tag location relative to a genomic element of interest.
The associated SNPs are located in an 8 kilobase (kb) region of the 3' end of PLA2G4C, near the genomic element of interest, but show little LD with each other (Additional file 5 Figure S1) or other SNPs in PLA2G4C documented in the International HapMap Project database [ 17].
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