Sentence examples for genomic elements in from inspiring English sources
In this study, we propose a new comparative genomics approach to identify accessory genomic elements in draft genomes produced by NGS.
As discussed earlier, epigenomic profiling can be used to annotate functional genomic elements in a genome-wide and cell-type specific manner.
Millions of interval-based genomic annotations are available from multiple online resources, most notably the UCSC genome browser, which provides genomic elements in BED file format (chromosome, start, stop and label).
Our data revealed that CpGs of the protein-coding genes, particularly their coding exons (CDSs), were most frequently subjected to methylation modification compared with other genomic elements in the oyster genome, a pattern similar to that found in other invertebrates [ 5, 6, 8, 10].
This problem is important because sequence features associated with various classes of genomic elements in chromosomal and plasmid genomes are generally different (Zhou et al., 2008); hence separation of these two classes of sequences is the prerequisite to accurate computational identification of such genomic elements.
As whole genome sequencing of bacterial strains becomes more widespread and cost-effective, methods to quickly and reliably identify accessory genomic elements in newly sequenced P. aeruginosa genomes will be needed.
WordCluster generalizes the previous CpGcluster algorithm [ 7] to any word or genomic element in the genome, at the same time associating a statistical significance to the clusters found.
To examine the cardiomyocyte architecture in more detail and to avoid obscuration of the heart by the closely attached non-cardiac dorsal diaphragm (also known as the ventral longitudinal muscle), we generated transgenic flies harboring GFP under the direct control of the cardiac-specific tinC genomic element in the context of the tinC-Gal4 driver (designated tinC-GFP; tinC-Gal4).
Endogenous retroviruses (ERVs) are genomic elements present in the genomes of almost all vertebrates.
The "NumtS Sequence" tracks are available in the hg18 release of the human genome, in the track section "Variation and Repeats": this feature broadens the examination potential of NumtS within their genomic context, as they can be intuitively displayed and merged with annotations of other genomic elements available in the Genome Browser.
Genes specific to the USA300 lineage appear to be associated with bacteriophage and mobile genomic elements present in USA300 that are absent in the USA400 lineages.
