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SP did the major part of the genomic database analysis and participated in the comparative studies of genomic sequences and transcripts.
This analysis, complemented by BAC end-sequencing and genomic database analysis, has also established the chromosomal orientation of NCBI nucleotide contigs that contain these genes, and which span ~11 Mb.
However, genomic database analysis of sequences that did not derive specifically from the germline CosC2 insert but which directly flank the previously described HPV6a integration site indicates that HPV6AI1 maps not to 10q24 but to the interface of chromosome band 14q13.3-q21.1.
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Approximately 250 genes, selected from the published literature, genomic databases, pathway analysis, and from microarray-based gene expression profiling experiments performed using fresh frozen tissue, were considered as candidates.
Moreover, researchers can vary the genomic database and the pathway analysis program.
Further, the D. radiodurans IrrE homologue is detected only in D. geothermalis based on genomic database searches and phylogenetic analysis, suggesting that IrrE appears to be a Deinococcus genus-specific regulator (Figure 7).
Additionally, mutational analysis, genomic database, and bioinformatics approaches can further provide extensive information of functional and structural properties of these biological vital proteins in stem cell maintenance and differentiation.
Genomic data and annotation are typically made accessible via public genome portals at sequencing centers such as the US Department of Energy's Joint Genome Institute (JGI) [ 13] and the Broad Institute [ 14], while other groups have developed Web-based genomic database resources that provide additional analysis tools [ 15] and browsing options [ 16] to increase the utility of the data.
All primers were designed from sequences obtained from the Histoplasma capsulatum G217B genomic database (www.genome.wustl.edu) using MacVector sequence analysis software (Accelrys).
We have performed an extensive database analysis to determine the genomic and cDNA sequences of the TACCs from phylogenetically diverse organisms.
We report an exhaustive analysis of the P. falciparum genomic database (PlasmoDB) aimed at identifying and classifying all protein phosphatases (PP) in this organism.
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