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For example, the genomic by design model postulates that the activity of a gene is a key determinant of its structure.
Through these experiments we measure the effect of non-adaptive versus adaptive forces on the accumulation of binding sites and quantify evolutionary advantages and disadvantages of environments of high binding-site gain and high binding-site loss genomic by the availability of innovative phenotypes (evolvability).
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Samples are represented by rows, genomic regions by the columns sorted on genomic order.
This was recently confirmed by a genomic analysis by Conrad et al. [ 8, 9].
Genotyping was performed by amplification of genomic DNA by polymerase chain reaction.
Genotyping of the OsIRE1 loci was performed by genomic PCR followed by restriction digestion, as shown in Figure 2b.
Presence or absence of MJ1 was determined by genomic PCR followed by sequencing.
To map MUL1 imprecise excision lines, breakpoints were determined by genomic PCR followed by DNA sequencing.
(B ) Overview of all eQTL, arranged by genomic position, shaded by log10 p-value.
The resulting alignment is corroborated by genomic position and by molecular weight of aligned ORFs.
Peaks with identified motifs were obtained by intersection between the peaks and motif-mapped genomic regions by BEDTools-Version-2.16.2 BEDTools-Version-2.16.2 BEDTools-Version-2.16.2
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