Sentence examples for genomic assemblies and from inspiring English sources

All the genomic assemblies and sequences used in this analysis are available at VectorBase (http://www.vectorbase.org).org

STS content mapping with regional clones confirms the predicted genomic assemblies and places this gene distal to the BP3 HERC2-containing breakpoint.

Genomic assemblies and annotations for alignments were downloaded from the following locations: A. thaliana (http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/agicomplete.jsp), V. vinifera (http://www.plantgdb.org/VvGDB/), P. trichocarpa (http://www.phytozome.net/poplar.php), and T. cacao cv.

Alternatively, some strains may have undergone intense transpositional activities, but if their LTR elements are highly fragmented as the result of successive nested insertions, they may have escaped both resolution during the steps generating the genomic assemblies and detection by our searches.

We assume that repeat sequences are not always the cause of genome degeneration in the genomic assembly, and more precise analysis is necessary for an accurate conclusion.

Our work has extended the profile of histone modifications from the short arm- and long arm-centromere boundaries into the X centromere using sequences that have been excluded from the genomic assembly and from all genomic tiling arrays.

Glyma1.89 genomic assembly and transcriptome models, available on Phytozome [ 15], were applied as reference for annotation of mapping reads.

Heterozygosity is a major challenge to efficient, high-quality genomic assembly and to the full genomic survey of polymorphism and divergence.

Exon candidates for the Affymetrix GeneChip Tobacco Exon 1.0 ST Array were identified from two main sources: exons predicted with AUGUSTUS and FGENESH within the tobacco genomic assembly and exons from the alignment of tobacco ESTs to the assembly.

For our clinical omics workflow, user-defined rules and constraints were used to ensure that all datasets were of the same genomic assembly and that specific datasets were processed using specific workflow components.

This gene turned out to be present in two copies in the neo-Y genomic assembly and also in two copies on Muller C in D. pseudoobscura, but only in one copy on the neo-X (Additional file 2).