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Interestingly, 115 AIEC LF82 CDSs (2.6%), not found in any E. coli genomes used in our comparative genomic analysis, were identified as LF82 unique CDSs (Table S4).
In this study, primary dermal fibroblast cultures of cows and microarray-based genomic analysis were used to investigate the cause(s) for the variable response to LPS.
Results from our K288 genomic analysis were compared with preliminary S. iniae (strain 9117) sequence data obtained from the BCM-HGSC website (http://www.hgsc.bcm.tmc.edu).hgsc.bcm.tmc.edu
Moreover, the previous and valuable results for genomic analysis were also displayed such as RNA-seq and predicted microRNA data.
Selected variants detected in the genomic analysis were subsequently validated in multiple tumoral implants from the primary tumor and the recurrence.
Some calli were chosen from different seed scutella; WT seeds used for generation of MucoRice-CTB lines and for genomic analysis were from different individuals.
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An in-silico subtractive hybridization based-comparative genomic analysis was undertaken using the genome-wide sequence data of these two Psg strains, which allowed us to comprehensively identify the genetic variation between them.
Genomic analysis was done on UCSC genome browser web site [ 41].
Large-scale genomic analysis was conducted with these 7 Nm genomes, 27 additional Nm genomes from GenBank, and 4 other Neisseria genomes.
In the absence of whole genome sequences for most aquaculture species, comparative genomic analysis is useful.
Comparative genomic analysis was done using Pathan (PTN) genome and the other previously published Pakistani (PK1) genome.
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