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In primate genomes, studies based on nucleotide substitutions suggest that most mRNA retrocopies originated within the primate lineage 90 40 Ma, in parallel with a SINE expansion (Ohshima et al. 2003).
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In most of the other draft genomes studied, this genomic island constitutes a small contig.
Among the 50 genomes studied, the sizes ranged from 2,220 2,274 bp for ychF+rpoB+secY.
The Ensembl Genome Browser [ 37] was also used to align syntenic regions of the genomes studied.
RGPs account for about 60% of the genome in each of the four genomes studied.
We did not find any protein related to Nucleophosmin (NPM) in both the plant genomes studied.
Strikingly, ΨEs occur at a consistent level across all of the mammalian genomes studied.
Most genomes studied to date contain TE families that are currently active.
In contrast to gar, most teleost genomes studied have been strongly shaped by DNA transposons.
Gentles and Karlin [ 31] report a distinct dinucleotide signature for each of the genomes studied here.
We identified 16 aminoglycoside resistance associated loci in the genomes studied.
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