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A total of 966 serine proteases belonging to the five serine protease families were identified in the 91 prokaryotic genomes for which the complete genomic data is available.
His team recently found that the genomes of such ants are changing the fastest of any genomes for which comparative data exist.
A similar analysis was carried out on several other mammalian genomes for which complete sequences for the elastin mRNA could be identified.
Most genomes for which draft assemblies are available have been assembled using the whole-genome shotgun (WGS) method or a hybrid-WGS technique.
Such an approach has advantages when applied to duplication-rich metazoan and plant genomes, for which positional homology is often not as clear as in smaller microbial genomes.
Genomes for which no assignment was automatically made usually contained more than one copy of a given PGM type, or PGM similar to an archaeal PGM query, or lacked any form of PGM.
By comparing the GC contents of the E. coli model genome and the HT source model genomes for which these methods are the less efficient, N. gonorrhoeae, Synechoccystis sp., A. fulgidus and T. maritima, it appears that these model genomes are those presenting almost the same GC% as E. coli.
We did not consider genomes for which no publications were available.
We analyze Titanium data sets from genomes for which the sequence has been determined.
aindicates the genomes for which genome sizes were estimated based on the sum of contig lengths.
Additional file 5: Performance of Microtaxi on 17 bacterial genomes for which the complete taxonomic classification is not available.
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