Sentence examples for genome were designed on from inspiring English sources

For amplification and analysis of the full-length viral genome, 13 pairs of primers covering overlapping fragments of the genome were designed on the basis of the sequence of the PIV5 isolate KNU-11 (8 ).

In terms of transcriptomic tools, a whole-genome microarray containing 22,987 oligonucleotides of 70-mers that cover the presently known and predicted genes in the Bombyx genome was designed on the basis of the whole-genome sequences [ 11].

Walking primers for amplifying and sequencing the remainder of the genome were designed based on the assembled contigs and reference genomes (see Additional file 1).

Primer sequences used for amplification of the twelve ORFs from the B. pseudomallei strain D286 genome were designed based on the 12 annotated ORFs and are listed in Table 2.

All of these 75 putative MAPKKK gene family members in B. distachyon genome were designed as BdMAPKKK1- basePKKK75 base on the BBMH scores between putative BdMAPKKK genes with MAPKKK gene family in O. sativa.

Fourteen pairs of primers for genotype 2 PRRSV (Table 1), covering the full-length genomes, were designed, based on JXwn06 (Accession number EF641008).

In order to estimate the nucleotide diversity at the whole genome scale, seventy-seven other primer pairs were designed on genes chosen randomly along the genome, taking care that each chromosome was represented by three to five fragments [additional file 3].

This separation of the Hereford breed probably reflects ascertainment bias of the SNPs since all SNPs of the Illumina BovineHD BeadChip were designed on the genome sequence that was derived from the sequence of a Hereford cow, thus increasing the observed diversity in this breed.

While some of these breed differences could be related to the fact that the SNP markers were designed on the reference genome sequence (which was derived from the sequence of a Hereford cow of European origin; L1 Dominette 01449), our observation of differential CNV counts in different breeds and subspecies was largely consistent with their histories and divergences.

Primers (Table  1) were designed on the basis of the NCBI reference genome contig (NT_008183.18).

TaqMan probes and primers were designed on the 16S ribosomal RNA sequences of phytoplasma genome.