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a: Genome type defined in previously published works based on genomic in situ hybridization analysis [ 36].
Fig. 2 Representative species of Oryza for each known diploid genome type.
O. brachyantha is the earliest diverged diploid species having an FF genome type (Vaughan et al. 2008).
Table 1 African Oryza species, their chromosome numbers and genome types Species 2n Genome type Oryza sativa L. 24 AA Oryza longistaminata A. Chev. et Roehr.
We, therefore, used the value estimated for O. ridleyi [HHJJ; 1,283 Mbp], which is also an allotetraploid species and shares the HH genome type with O. coarctata.
Two sequences of Hd6 derived from the different genome type of tetraploid O. minuta revealed nucleotide variations at two sites, but both were synonymous substitutions.
The chance of actual transfer of GM genes to wild populations is highest for O. glumaepatula which has an AA genome type and hence is genetically compatible with O. sativa (Naredo et al. 1997; Naredo et al. 1998).
First, we do not see any close correlation between genome type and geographical location or time of isolation.
LeBron is a singleton phage and thus presents a new genome type not closely related at the nucleotide level to any previously sequenced mycobacteriophages (Fig. 1).
The greatest disparities are observed when a codon of the type RRR or YYY in an extended RNA genome type I, or a codon of the type YRR or YYR in an extended RNA genome type II, are compared with the original prokaryote genome (Table 1).
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Such evidence, coupled with the high copy number of this element, makes Atlantys LTRs promising candidates for the design of species-specific (or at least genome type-specific) probes.
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