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This left 1156 orthologous clusters in the core genome shared by the four Dmel Providencia species isolates.
Comparison of the predicted gene content was performed to identify the core genome shared by strains and the variable accessory genome between strains.
The core genome shared by all eleven strains is composed of 1,882 genes, which make up about 31%50%% of the genome repertoire.
There are 26.2 Mb of the human genome shared by all four technologies; the majority of which falls in CCDS exonic regions.
Finally, the full probability distribution for the fraction of genome shared by a pair of individuals through segments in the length range R can also be computed using the previously described quantities.
The Bm core genome (shared by all seven strains) is smaller in size than that of Bp, but the inverse is true for the variable gene sets that are distributed across strains.
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This was driven by a large positive loading of the first principal component by the Streptococcus phage Cp-1, which segregated Non-CF2, and negative loadings on the set of phage genomes shared by Non-CF1Asthma, Non-CF4Spouse and the CF metagenomes.
The observed pan-genome shared by the 15 strains consisted of 4,730, genes including 1,202 core genes, 1,388 dispensable genes and 2,040 unique genes.
There were 2374 S. suis orthologous gene clusters and 1211 unique genes, and the observed pan-genome shared by the 13 strains consisted of 3585 genes.
It resulted in only 6%% of the pan-genome shared by all genomes (core genome) revealing far greater diversity than expected (Lukjancenko et al. 2010).
C-genome, shared by all polyploid species in the complex, had experienced different evolutionary history particularly after polyploidization, e.g., inter-genomic exchange in BBCC and genomic invasion in CCDD tetraploids.
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