Sentence examples for genome server from inspiring English sources

Genomic sequences were acquired from the Ensembl Genome Server[ 71] and other sequences from the databases at NCBI[ 72].

For the ≥1.5-fold differentially expressed genes, the locus information corresponding to the Affymetrix probe set IDs was obtained from the National Science Foundation rice oligonucleotide array project (http://www.ricearray.org/matrix.search. shtml) through the rice genome server of The Institute for Genome Research, Rockville, MA (Yuan et al. 2005; Ouyang et al. 2007).

Zebrafish whole-genome shotgun trances and the assemblies were obtained from the Ensembl Zebrafish Genome Server (ftp://ftp.ensembl.org/pub/traces/danio_rerio/fasta).org/pub/traces/danio_rerio/fasta

We compared c-fos mouse genomic sequences with those from Homo sapiens, Sus scrofa, Gallus gallus, Xenopus laevis [32], Fugu rubripes and Danio rerio (see Methods section for accession numbers), using the VISTA genome server.

The Ensembl MART genome server database was queried for GPCR family members.

The full human genome sequence (build hg18) was copied from the UCSC genome server http://www.genome.ucsc.edu.ucsc.edu

In other words, Soluto's new look builds on technology it already has in place, including its "low-level" agent and backend PC Genome servers — except that now these technologies will be wrapped in a webby user experience.

For genome content analysis, families of homologous proteins were built from 861 fully sequenced bacterial genomes downloaded from the NCBI ftp Genomes server.

Finally, HMM searches were performed with HMMER 3.0 (hmmer.org) against a local databank of 841 complete bacterial genomes (only one representative per species), including 435 from Proteobacteria downloaded from the NCBI ftp Genomes server using a model built on the multiple alignment of all previously recovered Reb proteins, but no additional homologs were found.

Coding sequences with 4-bp upstream data for most species were downloaded from ensembl genomes servers (http://www.ensemblgenomes.org, last accessed March 25 , 2011.

To identify orthologues in teleost fish species, the four UCP members identified in sea bass were blasted against zebrafish, medaka, takifugu, tetraodon and stickleback genomic sequences using the Ensembl genome browser server (Ensembl BLASTN, "distant homologies" settings).