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Genomic selection, or whole genome selection, is a type of marker-assisted selection that uses dense marker coverage to track alleles for most or all quantitative trait loci (QTL) in the genome [ 6].
Moderate linkage disequilibrium (LD) indicates the usefulness of loci pairs for whole genome selection.
This also means that only a part of the genome needs to be monitored when using markers for whole genome selection.
Eventually, knowledge of the relative values of alleles at all loci segregating in a population could allow the breeder to design a genotype in silico and to practice whole genome selection.
With additional background genome selection, the recurrent genome background can further improve the %RGC and optimize the expression of introgressed QTLs.
The identification of the functional genes in cultivated rice and the high degree of natural allelic variation in wild rice will be beneficial for developing elite super rice varieties such as new idiotype super rice with indica-japonica heterosis (Liu et al. [2012]; Guo and Ye [2014]) or green super rice (Zhang [2007]) through genome selection or molecular breeding via gene design.
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"The variants and population structure described here are essential inputs for marker-assisted and genome selection-based approaches to improving disease resistance and yield for this staple crop," noted the team, which included UC Berkeley specialist Jessen Bredeson and postdoctoral scholar Jessica Lyons.
In an attempt to capture multiple selection signals across the genome, selection-signal enrichment strength (ES) values of HET, F ST, and P-values of iHS of most annotated genes have been calculated and integrated within one frame for users to search for outliers.
The themes covered include statistical genetics & genomics and genomic selection & genome-wide association mapping.
This paper introduces recent progress in the genetic dissection of complex traits, marker-assisted introgression of agronomic traits, and whole-genome selection strategies that accelerate the genomics-assisted breeding of rice.
Coupled with some new assumptions about genomic imprinting, kin selection theory makes some striking new predictions about within-genome selection on social insects, particularly those with haplodiploid genetic systems.
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