Sentence examples for genome inference from inspiring English sources

Improved genome inference in the MHC using a population reference graph.

Their test results showed that the extension approach is very accurate in terms of ancestor genome inference and phylogenetic reconstruction.

This partially explains the pervasiveness, in the field of ancestral genome inference, of reconstructions in two or more steps.

Our extensive testing using simulated datasets shows that GRAPPA-TP is very accurate in terms of ancestor genome inference and phylogenetic reconstruction.

Using whole genome inferences, Kivisild et al. [ 11] proposed that portions of the mitochondrial genome have undergone positive selection during the evolution of humans.

We therefore evaluate each genome architecture inference method with respect to the similarity of the structures inferred from two replicate Hi-C experiments that differ only in the choice of restriction enzyme.

Further tools and algorithms were also developed to deal with whole genome network inference [ 13, 14], but the gene-gene interactions in such inferred networks were either undirected (no assigned causality) or carry only a statistical probability of causality.

A further avenue of genome rearrangement inference would be to combine the positional homology information in a progressiveMauve genome alignment with the repeat family information available from general local-multiple alignment programs such as Repeatoire [34].

Despite that, a progressiveMauve alignment with differential content can be trivially reduced to contain only segments conserved among all taxa of interest, yielding a signed gene-order permutation matrix that is suitable for current genome rearrangement inference software.

A direct comparison between genome tree inference methods is lacking, especially with the alignment-based method GBDP.

Contrary to other genome tree inference methods, our aim is to improve performance for a group of genomes defined by a common factor, such as genome-wide GC-content or habitat, and not to reconstruct the entire tree of life.