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For this type of analysis, we first constructed a rat genome compilation (exRefSeq) by combining the data from rat, mouse, and human RefSeq genes (Figure S3).
However, PNMA6A gene orthologue is not present in the corresponding location in the mouse genome compilation of the NCBI database.
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Taking advantage of the automatic annotation of the Paramecium genome, a compilation of the number of ESTs for each of the 51 epiplasmins was performed (from file ), giving a probable estimate of their expression rate (within a range of 0 to 72 EST).
However, compilation of genome sequences has revealed the evolutionary persistence of T4SS genes (e.g., vir, tra, trw, etc).
There is only one other serious compilation of genome sequencing projects, the GOLD database [ 6].
This shortcoming was soon addressed with a compilation of genome size estimates for 247 species of red, green and brown macroscopic algae (Kapraun 2005).
This major gap was addressed with a compilation of genome size estimates for 247 species of macroscopic marine algae, including data for 95 isolates and species of red algae (Kapraun 2005).
We found that the pan-genome continued to expand after the compilation of 24 genomes, whereas the number of core genes remained relatively stable with the addition of new strains.
Graphing the numbers of core and total features ("pan-genome", or total number of different genes found within a species) as a function of the number of strains sequenced revealed the slope for core gene number was approaching an asymptote, whereas the pan-genome continued to expand even after compilation of 17 genomes.
Compilation... compilers?
This could lead, for example, to the compilation of the genome of an Eremothecium ancestor at the base of the Eremothecium lineage that could be compared with other ancestral genomes, e.g. that of the yeast ancestor just prior to the whole genome duplication.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com