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Both mean genetic richness (12.0) and genetic diversity indices (0.640) of the landraces were higher than those for modern varieties at 9.8 and 0.628, respectively.
As expected from the way in which the collection was constructed, the combination of mean genetic richness (13.1) and genetic diversity index (0.650) indicated high levels of polymorphism.
Results of allelic diversity using 512 SSR markers indicated that the landraces (mean genetic richness: 12.0; genetic diversity index: 0.640; allelic richness: 10.7) actually had higher genetic diversity than modern varieties (mean genetic richness: 9.8; genetic diversity index: 0.628; allelic richness: 9.5).
Bioinformatics analysis of genomics data will provide fundamental insights into both the African genetic richness and the understanding of specific diseases.
GenClone identified 23 unique multilocus genotypes (MLGs) among the 179 P. infestans isolates, corresponding to a genetic richness of R = 0.128.
"The genetic richness and complexity of the bugs we carry is much richer than our own," says Jayne Danska, an immunologist at the Hospital for Sick Children Research Institute in Ontario, Canada.
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The two measures of genetic diversity, allelic richness and expected heterozygosity, differed among the contemporary populations, but only significantly so for allelic richness (Oneway ANOVA, F6,55 = 3.98, P = 0.004).
Seven Tropheus populations harboured comparable levels of genetic diversity (allelic richness: 11.9-14; observed heterozygosity: 0.78-0.83), while the population of Muzumwa had slightly lower values (allelic richness: 9.7; observed heterozygosity: 0.73).
A second measure of genetic diversity, allelic richness, was computed in F STAT for both contemporary and historical samples and differences in allelic richness and expected heterozygosity among samples were tested using repeated-measures ANOVA in JMP.
Measures of genetic diversity (allelic richness, Shannon's information index, Nei's unbiased genetic diversity, clonal diversity, the number of multilocus genotypes, the number of private alleles, and the minimum number of colonization events) were calculated and compared between Usnea populations.
To eliminate the influence of sample size on evaluations of genetic diversity, allelic richness calculated following rarefaction on samples of 68 accessions per sub-group likewise indicated that landraces had higher genetic diversity than modern varieties (Table 2).
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